4ERL Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4ERL_005 | 1/A/35:52 | No text annotation | homologous HL_3D0U_005 HL_10456.1 | |
| HL_4ERL_001 | 1/A/38:51 | No text annotation | geometric HL_3D0U_001 HL_20751.3 | |
| HL_4ERL_002 | 1/A/90:98 | Pseudoknot geometry | homologous HL_3D0U_002 HL_52651.4 | |
| HL_4ERL_003 | 1/A/121:127 | GNRA | homologous HL_3D0U_003 HL_34789.6 | |
| HL_4ERL_004 | 1/A/142:147 | GNRA | homologous HL_3D0U_004 HL_34789.6 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4ERL_001 | 1/A/9:11, 1/A/75:76 | Single bulged C | homologous IL_3D0U_001 IL_05642.5 | |
| IL_4ERL_002 | 1/A/16:19, 1/A/67:70 | Double sheared | homologous IL_3D0U_002 IL_58355.4 | |
| IL_4ERL_003 | 1/A/19:27, 1/A/60:67 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | homologous IL_3D0U_003 IL_34470.3 | |
| IL_4ERL_004 | 1/A/35:38, 1/A/51:52 | Major groove platform; stack outside cWW | homologous IL_3D0U_004 IL_74641.4 | |
| IL_4ERL_005 | 1/A/81:82, 1/A/106:108 | Single bulged G | homologous IL_3D0U_005 IL_28408.4 | |
| IL_4ERL_006 | 1/A/112:114, 1/A/134:136 | Isolated non-canonical cWW pair | homologous IL_3D0U_006 IL_01003.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4ERL_007 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_4ERL_001 | 1/A/6:9, 1/A/76:79, 1/A/110:111, 1/A/137:139, 1/A/150:155 | No text annotation | homologous J5_3D0U_001 J5_94937.1 |
Problematic loops
No problematic loops
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